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Test-drive the GATK tools and Best Practices pipelines on Terra
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CNView: new software for plotting CNVs
I came across this rather tantalising program for plotting multi-sample CNVs in genomic intervals. It requires depth data in bed format. This might require bed tools.
I was wondering if you could direct me to a genomestrip file that contains the depth information.
I was thinking it might be profile_seq_chr4_100000.dat.gz (from preprocessing), or *.genotypes.counts.dat (from deletion discovery/genotyping).
The link to the software is: