Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
parallelizing HC on PBS with Queue
I'm attempting to use Queue on PBSPro HPC cluster. I have tested the functionality of a custom scala script for Haplotype Caller and it is runnable. However, following the discussion on GATK forum, I should need a job scheduler to dispatch queue output on several nodes..could you give me some advice or examples of the type of scheduler I need in a PBSpro system?
I tried to run Queue on a single node and it seems working faster..the question is: when I run Queue on a single node I actually 'multithreading' HC or I'm wrong?
Thanks a lot