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gatk depthofcoverage parsing error on a list of refseq genes

ImbeaudImbeaud Paris (FranceMember


I tried to perform a gatk depthofcoverage to extract the coverage on a list of refseq genes but encounter an problem at the end of analysis with the following error message.

ERROR MESSAGE: Error parsing line at byte position: [email protected], for input source: /mnt/MD1200_2/ANALYSECELLLINES/refseq_March16__hg19_sorted.IG.txt

Sorry if this has already been asked but is there a way to solve that problem.
The refeseq genelist and bed file was done and sorted according the gatk recommandation.

All the best
/ Sandrine


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