Hi, Can mutect2 be used for RNA data? thank you very much!
Sure, you can use MuTect2 for RNA-seq data.
I should add, that while you are free to use MuTect2 on RNA-seq data, we have not tested it, so we will not be able to provide support. Also, you will have to do the preprocessing as recommended for RNAseq data. Have a look at the Best Practices for more information.
Thank you very much !