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In term of algorithms, what is the difference between haplotypecaller and unifiedgenotyper

bbsunchenbbsunchen USAMember ✭
in Ask the GATK team

Under every poster of GATK asking which is better, HC or UG, Geraldine always said HC.

So Is there any documents talking about the detail algorithms HC and UG are using, so that I can get a clear idea why HC is better?

Thanks.

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