We've moved!
This site is now read-only. You can find our new documentation site and support forum for posting questions here.
Be sure to read our welcome blog!

functional annotation

I'm trying to do functional annotation on variants called by HaplotypeCaller from P. vivax whole genome sequences using snpeff version 3.6b, but I get the error "WARNING: Unkown IUB code for SNP '*'Error while processing VCF entry (line 3078)." I see in the forums that later snpeff versions are no longer supported, should I use a different program for functional annotation?

Best Answer


Sign In or Register to comment.