How to add Genomic Annotations Using SnpEff and VariantAnnotator for non-model organism?
I am working on a non-model organism and have finished the variant calling process using GATK. I have a VCF file containing variants and my next task is to see the effect of those mutations on the genome. I have been looking at several threads for the same and could not quite grasp what was being written. How should I proceed? @Geraldine_VdAuwera @Sheila