downsampling to coverage
I recently went from GATK v3.3 to v3.5 and I'm now having trouble with downsampling using -dcov. I had -dcov set to 500 and received an error that -dcov could not be used with HaplotypeCaller which appears to contradict the documentation. I do see however that the default downsampling to coverage is set to 500. I'm just wondering why I received this message, can -dcov no longer be used in v3.5? It worked fine in v3.3.