Mutect2 variant filtering settings

imamovicimamovic BostonMember, Broadie

Hi,

I used Mutect2 for variant calling in RNA-Seq data. For the most part, it worked well, except that it filtered out a variant I was really interested in by using the 'clustered events' filter. How can I modify this feature so to prevent this from happening again?

Thanks,
Alma

Tagged:

Issue · Github
by Sheila

Issue Number
690
State
closed
Last Updated
Assignee
Array
Milestone
Array
Closed By
vdauwera

Best Answers

Answers

  • imamovicimamovic BostonMember, Broadie

    Thanks Geraldine. One more question: can Mutect2 produce the call_stats output like the previous version?

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