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Incorrect number of PL fields

Hi,
I'm trying to merge vcf files produced by GATK (HaplotypeCaller,Version=3.4-46-gbc02625) using either bcftools or vcftools and I h=get this error:
Incorrect number of PL fields (6) at 1:934345, cannot merge.
there are actually more values to PL than 3. any fix around that?

thanks,

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