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Files needed for variant recalibration for Arabidopsis thaliana

Dear all,

I am analyzing different Arabidopsis thaliana ecotypes for the first time using GATK. I am following the best practices guidelines without any problem but when I reached the step for variant recalibration

https://www.broadinstitute.org/gatk/guide/tooldocs/org_broadinstitute_gatk_tools_walkers_variantrecalibration_VariantRecalibrator.php

I cannot find the files necessary for the argument --resource ( I only found these files for human but not for Arabidopsis ). I am stuck at this point any help would be much appreciated.

Thank you very much,

Marta

Answers

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