To celebrate the release of GATK 4.0, we are giving away free credits for running the GATK4 Best Practices pipelines in FireCloud, our secure online analysis portal. It’s first come first serve, so sign up now to claim your free credits worth $250. Sponsored by Google Cloud. Learn more at https://software.broadinstitute.org/firecloud/documentation/freecredits

GATK for finding SOMATIC mutation with both Normal and tumor samples

Dear All,

I would like to know whether GATK has any way to get somatic variants by giving both normal and tumor samples on the command line, I mean as Varscan does. ?

Thank you

Best Answers

Answers

Sign In or Register to comment.