Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Mutect output reproducibility?
I just wanted to ask you that If I run mutect two times with the same parameters, do I expect same output or is there something stochastic going in the algorithm? If yes, I ran mutect with same parameters two time. The only difference was in one file there is vcf output positive and in the other file it was negative.
Thank you very much in advance.