Error when running oncotator

Hi,

I installed Oncotator v1.8.0.0 on RHEL.

I am getting following error when running the command oncotator -h

Traceback (most recent call last):
File "/usr/bin/oncotator", line 9, in
load_entry_point('Oncotator==v1.8.0.0', 'console_scripts', 'oncotator')()
File "/usr/lib/python2.6/site-packages/distribute-0.6.15-py2.6.egg/pkg_resources.py", line 305, in load_entry_point
return get_distribution(dist).load_entry_point(group, name)
File "/usr/lib/python2.6/site-packages/distribute-0.6.15-py2.6.egg/pkg_resources.py", line 2244, in load_entry_point
return ep.load()
File "/usr/lib/python2.6/site-packages/distribute-0.6.15-py2.6.egg/pkg_resources.py", line 1954, in load
entry = import(self.module_name, globals(),globals(), ['name'])
File "/usr/lib/python2.6/site-packages/Oncotator-v1.8.0.0-py2.6.egg/oncotator/Oncotator.py", line 52, in
from oncotator.utils.RunSpecificationFactory import RunSpecificationFactory
File "/usr/lib/python2.6/site-packages/Oncotator-v1.8.0.0-py2.6.egg/oncotator/utils/RunSpecificationFactory.py", line 2, in
from oncotator.DatasourceFactory import DatasourceFactory
File "/usr/lib/python2.6/site-packages/Oncotator-v1.8.0.0-py2.6.egg/oncotator/DatasourceFactory.py", line 53, in
from oncotator.datasources.EnsemblTranscriptDatasource import EnsemblTranscriptDatasource
File "/usr/lib/python2.6/site-packages/Oncotator-v1.8.0.0-py2.6.egg/oncotator/datasources/EnsemblTranscriptDatasource.py", line 75
POPULATED_ANNOTATION_NAMES = {'transcript_exon', 'variant_type', 'variant_classification', 'other_transcripts',
^
SyntaxError: invalid syntax

What am i doing wrong.

LSB Version: :base-4.0-amd64:base-4.0-noarch:core-4.0-amd64:core-4.0-noarch:graphics-4.0-amd64:graphics-4.0-noarch:printing-4.0-amd64:printing-4.0-noarch
Distributor ID: RedHatEnterpriseServer
Description: Red Hat Enterprise Linux Server release 6.5 (Santiago)
Release: 6.5
Codename: Santiago

Linux 2.6.32-431.17.1.el6.x86_64 x86_64

Issue · Github
by Sheila

Issue Number
560
State
closed
Last Updated
Assignee
Array
Milestone
Array
Closed By
chandrans

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