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ERROR LocationAwareSeekableRODIterator during CombineGVCFs
I am managing 952 gvcf files and I want to use GenotypeGVCFs. Due to the high number of individuals, I am first using CombineGVCFs by splitting the individuals by 200, as well explained in GATK.
I get the results for all blocks except one, here the error I received:
"##### ERROR MESSAGE: LocationAwareSeekableRODIterator: track variant169 is out of coordinate order on contig 8:96167119-96167120 compared to 8:96167252"
The few topics talking about ROD error date from 3 years ago, so I do not know how to handle the problem..
If someone could give me some advices it will be nice.