Holiday Notice:
The Frontline Support team will be offline February 18 for President's Day but will be back February 19th. Thank you for your patience as we get to all of your questions!

Error in calculaitng DepthOfCoverage for a single BAM file

aditiskaditisk Ann Arbor Member

Hi,

I am trying to calculate the depthofcoverage for my samples as a prerequisite for running XHMM. When I provide a list of BAM files as the input it works just fine. But I am trying to make the calculation on a single BAM file and later I am trying to merge this read depth calculation to the calculations from 4 groups of 10 BAM files each. I am using the --mergeGATKdepths command from XHMM for merging my read depth files.

The error I am getting is as follows:
ERROR: Could not read any samples from /scratch/chadbren_flux/aditisk/Cell_Line_Characterization/XHMM/49710.sample_interval_statistics [expected suffix in header is: _mean_cvg]

Does depthofcoverage not support single BAM files as an input ?

Best Answer

Answers

Sign In or Register to comment.