Is Parallel Computation Possible in MuTect2 in GATK3.5?

Haiying7Haiying7 Heidelberg, GermanyMember

If I define -nt, I got error message that says the software does not support parallel computation. So I suppose this is the answer.
But why the new version of MuTect is taking so much longer? The previous version took only a few hours, but now the new version with same parameter settings is still running after 3 days.

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