Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
number of variants and mutations
if I may ask a very simple question and very general : for a normal WGS sample (at least 30X), on average, how many variants would HaplotypeCaller typically produce in the VCF file ? And for a normal-tumor pairs (coverage at least 50x), how many mutations would Mutect1 or Mutect2 report ? many thanks,