Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
about dbsnp files
Dear Geraldine, and all,
as the BUNDLES contains 2 vcf files that are associated with dbSNP, particularly for hg19 :
which file 1) or 2) would you recommend to use for BSQR or or variant score recalibration ?