about distribution and parallelization
Dear all, good afternoon.
As I am very new to paralellization of GATK pipeline and just started reading about Queue, thought that I could ask you the following :
if we have "a list of intervals" (-L option) that includes all the human chromosomes, could we tell GATK or Mutect to run 1-2 chromosomes on each microprocessor of a cluster node in a parallel manner ? Will any additional software be required in order to do so ? many thanks,