Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
about distribution and parallelization
Dear all, good afternoon.
As I am very new to paralellization of GATK pipeline and just started reading about Queue, thought that I could ask you the following :
if we have "a list of intervals" (-L option) that includes all the human chromosomes, could we tell GATK or Mutect to run 1-2 chromosomes on each microprocessor of a cluster node in a parallel manner ? Will any additional software be required in order to do so ? many thanks,