Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
expected tranch plot?
Dear GATK team,
Very recently I ran a batch of 80 Exome datasets. When I checked the VQSR tranches plot, I noticed that any false positives or negatives were indicated. I am sending you the plot in the attachment. If my datasets are really lack of false positives or negatives, this would be amazing :-), however I do not think so. If you could let me know what is the underlying reason of this issue, I would be grateful.