Notice:
If you happen to see a question you know the answer to, please do chime in and help your fellow community members. We encourage our fourm members to be more involved, jump in and help out your fellow researchers with their questions. GATK forum is a community forum and helping each other with using GATK tools and research is the cornerstone of our success as a genomics research community.We appreciate your help!

Test-drive the GATK tools and Best Practices pipelines on Terra


Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.

MuTect Genotype Field

Hello,

I have noticed that when running MuTect, the variant calls in my output always have a genotype of 0/1. I have not seen any 1/1 genotypes, even when the variant allele frequency is 100%.

Are there any instances when MuTect gives a 1/1 genotype for a variant call?

Thank you,
Jeremy

Best Answer

Answers

Sign In or Register to comment.