Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
What INFO/FORMAT fields are required for ReadBackedPhasing algorithm ?
I have been trying to use ReadBackedPhasing, but its is producing an output with no phasing tags (HP tag). It works with a vcf file that is been called on a single bam file, but does not produce any output from vcf files generated from vcf-subset. In short, I would like to know what INFO/FORMAT fields it looks for while assigning HP tag.