The frontline support team will be slow on the forum because we are occupied with the GATK Workshop on March 21st and 22nd 2019. We will be back and more available to answer questions on the forum on March 25th 2019.
What INFO/FORMAT fields are required for ReadBackedPhasing algorithm ?
I have been trying to use ReadBackedPhasing, but its is producing an output with no phasing tags (HP tag). It works with a vcf file that is been called on a single bam file, but does not produce any output from vcf files generated from vcf-subset. In short, I would like to know what INFO/FORMAT fields it looks for while assigning HP tag.