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Test-drive the GATK tools and Best Practices pipelines on Terra
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What INFO/FORMAT fields are required for ReadBackedPhasing algorithm ?
I have been trying to use ReadBackedPhasing, but its is producing an output with no phasing tags (HP tag). It works with a vcf file that is been called on a single bam file, but does not produce any output from vcf files generated from vcf-subset. In short, I would like to know what INFO/FORMAT fields it looks for while assigning HP tag.