This site is now read-only. You can find our new documentation site and support forum for posting questions here.
Be sure to read our welcome blog!
GenotypeGVCFs processing stalls at position 999901
I'm running GenotypeGVCFs on about 50 samples, split by chromosome across several cluster nodes. I see that each sample, regardless of chromosome stalls at position 999901. This continues at 1999901, 2999901, and so on. More out of curiosity than anything, is there a straightforward explanation to this behavior?