We've moved!
This site is now read-only. You can find our new documentation site and support forum for posting questions here.
Be sure to read our welcome blog!

about the files in the bundle 2.8

BogdanBogdan Palo Alto, CAMember ✭✭

Dear all,

as I am just starting on GATK, please could you let me know whether there is a tutorial or a description of a sequence of commands that explains how to process the NA12878 bam file in order to go through GATK pipeline and obtain the output vcf files (in ftp://ftp.broadinstitute.org/bundle/2.8/hg19/) ?

much thanks ! And also, is there a benchmark bam file for Mutect ? just to test the pipeline on ..

-- bogdan


Sign In or Register to comment.