Test-drive the GATK tools and Best Practices pipelines on Terra

Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.

Mutect2 runs much slower than muTect 1.17

MuTect2 took a few days to process one pair of whole exome samples while muTect 1.17 only needs a few hours. Is this expected? Any suggestion as how to speed things up besides paralleling by chromosomes? Thanks!


Best Answer


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