Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
question in recapseg .pcov file
I had a question in recapseg. I would like to ask more clarification how to generate .pcov and .pcov.cr.stat file.
All file lists must have corresponding entries. These files will correspond to control/normal samples.
- control_pcov_file_list -- text file listing file paths to .pcov files. One entry per line.
- control_cr_stat_file_list -- text file listing file paths to .pcov.cr.stat files. One entry per line.
- control_sample_id_list -- list of sample ids for the corresponding pcov and cr stat files. One entry per line.
- panel of normals file (hdf5)