Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
About mutect output
Mutect output only single point mutations, What about t_ins_count and t_del_count,Can I use them to identify indels in a sample??
t_ins_count: count of insertion events at this locus in tumor
t_del_count: count of deletion events at this locus in tumor