Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Somatic Variant Calling with Tumor Samples Only
I recently went to the workshop for variant calling and mentioned that I would like to perform somatic variant calling with Mutect using only tumor samples (no matched normal sample). I was told that there is a pipeline under development that is not yet fully tested that you would be able to provide. Would you be able to provide this along with any other recommendations?