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Minor bug in the generated json doc:

lindenblindenb FranceMember ✭✭

in https://www.broadinstitute.org/gatk/gatkdocs/org_broadinstitute_gatk_tools_walkers_variantutils_SelectVariants.php.json

  "summary": "Output variants not called in this comparison track",
      "name": "--discordance",

      "kind": "optional_in",

'kind' should be optional_out isn't it ?

Issue · Github
by Geraldine_VdAuwera

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Best Answers


  • lindenblindenb FranceMember ✭✭

    got it.
    In the future, it would help to have an extra fileld to tell if an option is an output file or an input file :-)

  • Geraldine_VdAuweraGeraldine_VdAuwera Cambridge, MAMember, Administrator, Broadie admin

    That's a fair point, I'll see if I can add that in.

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