Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Problems in building mutect from github
https://github.com/broadinstitute/mutect I tried to get MuTect source by git clone [email protected]:broadinstitute/mutect.git. But I was not successful. And the same problem with getting GATK source.
Cloning into 'mutect'...
Permission denied (publickey).
fatal: Could not read from remote repository.
Please make sure you have the correct access rights
and the repository exists.
I tried several times, and had the same problem. The latest public version precompiled on the GATK downloads page https://broadinstitute.org/cancer/cga/mutect_download is 1.1.4. If possible, could you please provide the version of 1.1.7? Thanks very much.