The frontline support team will be slow on the forum because we are occupied with the GATK Workshop on March 21st and 22nd 2019. We will be back and more available to answer questions on the forum on March 25th 2019.
New tag in vcf
Is it possible add a tag in a vcf when I calculate the ratio of the second filed of AD and DP?
for example in this case:
chr13 32912299 . T C 2372.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-2.631;ClippingRankSum=-0.154;DP=266;FS=1.546;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.144;QD=8.92;ReadPosRankSum=0.162;SOR=0.596 GT:AD:DP:GQ:PL 0/1:155,111:266:99:2401,0,4319
I would like calculate 111/226
Thank you very much in advance