Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
New tag in vcf
Is it possible add a tag in a vcf when I calculate the ratio of the second filed of AD and DP?
for example in this case:
chr13 32912299 . T C 2372.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-2.631;ClippingRankSum=-0.154;DP=266;FS=1.546;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.144;QD=8.92;ReadPosRankSum=0.162;SOR=0.596 GT:AD:DP:GQ:PL 0/1:155,111:266:99:2401,0,4319
I would like calculate 111/226
Thank you very much in advance