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how to choose the cosmic file for MuTect

jingmengjingmeng AustraliaMember

I have a question for the cosmic file when using MuTect for somatic SNV discovery from tumour-normal exome sequencing data. Please look at this website, cancer.sanger.ac.uk/cosmic/download , I am not sure which file I need to download as input cosmic file for MuTect, complete mutation data or VCF files (coding and non-coding mutations) ? Thanks very much for your time.

Jing

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