Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
VQSR tag in FILTER is false positive variant ?
I wonder whether after VQSR , the variants which have VQSR tag in FILTER column filter out, including VQSRTrancheINDEL99.00 to 99.90, VQSRTrancheINDEL99.90 to 100.00+, VQSRTrancheINDEL99.90 to 100.00, VQSRTrancheSNP99.90 to 100.00, VQSRTrancheSNP99.90 to 100.00+? These means are false positive variants?
and What do 100.00+ mean?
Can I have Only "PASS" variants tin FILTER tab as true positve variant ?