Transform the output format (VCF) to NCBI dbSNP format
I am trying to transform GATK output format (VCF) to NCBI dbSNP format.
In the insertion/deletion part, I am confused now. I listed some examples as follows,
chr10 87952211 . CACAAGATGATGTTTGAAACTATTCCAATGTTCA C
For NCBI dbSNP format, is it "g.chr10:87952211delACAAGATGATGTTTGAAACTATTCCAATGTTCA"?
chr1 164799883 . A AGTTTC
For NCBI dbSNP format, is it "g.chr1:164799883_164799883insGTTTC" ?
Thank you for kind help.