Transform the output format (VCF) to NCBI dbSNP format

I am trying to transform GATK output format (VCF) to NCBI dbSNP format.
In the insertion/deletion part, I am confused now. I listed some examples as follows,

  1. deletion
    chr10 87952211 . CACAAGATGATGTTTGAAACTATTCCAATGTTCA C

For NCBI dbSNP format, is it "g.chr10:87952211delACAAGATGATGTTTGAAACTATTCCAATGTTCA"?

  1. insertion
    chr1 164799883 . A AGTTTC

For NCBI dbSNP format, is it "g.chr1:164799883_164799883insGTTTC" ?

Thank you for kind help.

Best Regard,
Wei-Chi Wang

Issue · Github
by Sheila

Issue Number
264
State
open
Last Updated
Milestone
Array

Answers

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