We’re moving the GATK website, docs and forum to a new platform. Read the full story and breakdown of key changes on this blog.
If you happen to see a question you know the answer to, please do chime in and help your fellow community members. We encourage our fourm members to be more involved, jump in and help out your fellow researchers with their questions. GATK forum is a community forum and helping each other with using GATK tools and research is the cornerstone of our success as a genomics research community.We appreciate your help!
Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Running GATK, GATK resources on Broad server?
I'm just about to try to get started using GATK for the first time, and I haven't been able to find a guide or any information on running GATK on the Broad server. I'm assuming there's a general use GATK version (akin to /seq/picard) and copies of gold standard variant files etc. already on the Broad, and I'd rather use these than re-invent the wheel.
Have I simply missed a post? Are my assumptions incorrect (and everyone separately installs GATK and downloads gold standard vcfs)? Any leads would be very much appreciated.
p.s. I tried searching the forum, guide, and BITS wiki - what am I missing?