Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Running GATK, GATK resources on Broad server?
I'm just about to try to get started using GATK for the first time, and I haven't been able to find a guide or any information on running GATK on the Broad server. I'm assuming there's a general use GATK version (akin to /seq/picard) and copies of gold standard variant files etc. already on the Broad, and I'd rather use these than re-invent the wheel.
Have I simply missed a post? Are my assumptions incorrect (and everyone separately installs GATK and downloads gold standard vcfs)? Any leads would be very much appreciated.
p.s. I tried searching the forum, guide, and BITS wiki - what am I missing?