Running GATK, GATK resources on Broad server?
I'm just about to try to get started using GATK for the first time, and I haven't been able to find a guide or any information on running GATK on the Broad server. I'm assuming there's a general use GATK version (akin to /seq/picard) and copies of gold standard variant files etc. already on the Broad, and I'd rather use these than re-invent the wheel.
Have I simply missed a post? Are my assumptions incorrect (and everyone separately installs GATK and downloads gold standard vcfs)? Any leads would be very much appreciated.
p.s. I tried searching the forum, guide, and BITS wiki - what am I missing?