Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
RealignerTargetCreator Entropy values in output
Hi GATK team,
I went recently to a workshop on GATK at the ASHG. There I have spoken with Geraldine about a possible way to utilize the RealignerTargetCreator command to find potentially off-target regions for CRISPR/Cas9 WGS data.
She suggested to me to use this utility and also told me that internally you calculate an entropy value for each region.
Would it possible to have in output also these entropy values?
Many thanks for any help you may provide!