We've moved!
This site is now read-only. You can find our new documentation site and support forum for posting questions here.
Be sure to read our welcome blog!

About SVAnnotation

SunhyeSunhye KoreaMember
edited October 2015 in GenomeSTRiP

Hi. I call structure variation and CNV using GenomeSTRiP2.0 , and I plan to apply annotation to my sv result.
I want to use "-A GeneOverlap" but I can't find related files such as "ucsc_gene_descriptions.dat" , " gencode.v17.annotation.sorted.gtf ".
Also SortGTFFile is not connected.

How can I find these files?
How to sort gencode.v17.annotation.gtf ?
Example )
In shell

$ sort   gencode.v17.annotation.gtf > gencode.v17.annotation.sorted.gtf 

Is this sort method right?

Best Answers


Sign In or Register to comment.