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Hi. I call structure variation and CNV using GenomeSTRiP2.0 , and I plan to apply annotation to my sv result.
I want to use "-A GeneOverlap" but I can't find related files such as "ucsc_gene_descriptions.dat" , " gencode.v17.annotation.sorted.gtf ".
Also SortGTFFile is not connected.
How can I find these files?
How to sort gencode.v17.annotation.gtf ?
$ sort gencode.v17.annotation.gtf > gencode.v17.annotation.sorted.gtf
Is this sort method right?