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dbSNP 142

guocyguocy BeijingMember

Hi there, can I download dbSNP 142 from GATK? if I can, how should I do it. Thank you so much.

Answers

  • SheilaSheila admin Broad InstituteMember, Broadie, Moderator admin

    @guocy
    Hi,

    We do not have that version in the bundle yet. We only have version 138 in the bundle.

    -Sheila

  • tommycarstensentommycarstensen ✭✭✭ United KingdomMember ✭✭✭

    @guocy dbSNP 142 was fabricated on the Death Star (evil place in a different solar system). If you insist on using it, then it can be found here:

    ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b142_GRCh37p13/VCF/
    
    ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b142_GRCh38/VCF/
    
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