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the multiallelic support of VCF QD/FS filed
Is there some way to make the VCF QD/FS filed support multiallelic ?
I Want to filter VCF by QD/FS info for RNA data.
1)The QD/FS filed is NOT the VCF Type
A'; Type 'A': If the Field has one value per alternate allele then this value should be A';
2)There is no way to let GATK to output VCF multiallelic separately.
Now multiallelic of VCF share the same QD/FS value.