Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
dbSNP variant IDs
I have two vcfs from D.melanogaster. The first contains in-house variant identifiers, the second contains NCBI-dbSNP variant identifiers. Only the first file contains the genotype data. There are 4 million variants in the first file and 5 million in the second. There is expected to be substantial overlap between the two in terms of what variants are present. How can I replace the in-house variant identifier with the dbSNP identifier for each corresponding variant ?