The Frontline Support team will be offline February 18 for President's Day but will be back February 19th. Thank you for your patience as we get to all of your questions!
Homo_sapiens_assembly19.kown_indels.vcf vs. Mills_and_1000G_gold_standard.indels.hg19.sites.vcf
Have a long standing stable pipeline, which I need to tweak as can be explained and justified.
What is the difference between the old file of known indels (from Mills paper(s)) - Homo_sapiens_assembly19.kown_indels.vcf
And the current version of known indels with 1000G added - Mills_and_1000G_gold_standard.indels.hg19.sites.vcf.gz
I know the newer reference is smaller - just sites. It also has significantly fewer records/line counts. What else was removed or added from the old version until now?
Thanks in advance.