Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
How does Mutect "work"?
sorry in advance for my maybe very simple questions:
Is there any more advanced documentation on Mutect than in the Nature Biotech. paper or on their web page? That is, something in between the rather general paper text statng that Bayesian classifiers are used and the source code (I cannot go through every line figuring the algorithm out...)?
How are the Bayesian classifiers trained (I suppose, they are trained somehow...)? Are they trained by default or somehow with my data?
Thanks in advance for any advice, best, Christian