Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Mutect for Rat data
I would like to confirm that when i use mutect with Rat data, it is not necessary to add neither dbsnp file nor COSMIC file (As COSMIC data is for human cancer only).
What about if i provided only dpsnp file, any call that is in dpsnp file will be excluded wether it is germ or somatic snp??