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GATK gtf file
I am using human_g1k_v37.fasta from GATK as a reference file for my Targeted Sequence Analysis.
I am using Homo_sapiens.GRCh37.75.gtf for making my interval file.
I understand there are a few differences between NCBI fasta sequence and the fasta by GATK.
Is there a gtf file from GATK that can is compatible with the fasta file provided by GATK.