Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
filter for strand bias in stranded RNAseq?
I was wondering if it makes sense to filter for strand bias as stated in the Best Practice RNAseq Variant Calling guide as most of todays RNAseq data is strand specific. I would actually expect high strand biases of variants and be suspicious about variants which do NOT show strand bias
...or did i get something wrong with the Fisher Strand values?