Service notice: Several of our team members are on vacation so service will be slow through at least July 13th, possibly longer depending on how much backlog accumulates during that time. This means that for a while it may take us more time than usual to answer your questions. Thank you for your patience.

In a VCF file, when DP=0, why it stills give a Genotype?

John1BlackmanJohn1Blackman CHINAMember
edited September 2015 in Ask the GATK team

I am dealing with my data using vcftools, in the generated vcf file, I found that when DP=0, why it stills give a Genotype, like 0/1 0/0 or something? I attached a pic, a screenshot from a vcf file. there are 2 lines showed DP=0,and still have a GT value! The question bothered me for a long time, HELP!!!

Best Answer

Answers

Sign In or Register to comment.