Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
In a VCF file, when DP=0, why it stills give a Genotype?
I am dealing with my data using vcftools, in the generated vcf file, I found that when DP=0, why it stills give a Genotype, like 0/1 0/0 or something? I attached a pic, a screenshot from a vcf file. there are 2 lines showed DP=0,and still have a GT value! The question bothered me for a long time, HELP!!!