This site is now read-only. You can find our new documentation site and support forum for posting questions here.
Be sure to read our welcome blog!
Haplotype caller for RNA-seq
I have been running HP for my RNA-seq data
java -Xmx16g -jar GenomeAnalysisTK.jar \
-T HaplotypeCaller \
-R $ref \
-I INPUT.bam \
-stand_call_conf 50.0 \
-stand_emit_conf 10.0 \
my process is killed when it was 82% completed. Is there a way to resume the run without running from the beginning ?
T. Hamdi Kitapci