Test-drive the GATK tools and Best Practices pipelines on Terra


Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.

calculating genome coverage

Hi, I'm using the best practices workflow and I'd like to work out how much of my genome is covered by x number of reads. Should I be using the realigned reads bam files to do this?

Thanks,
Hollie

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