Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
How do you use SelectVariants to compare cases and controls?
I can't seem to find this in the documentation (I'm sure it's there!). Can I use SelectVariants to pull out variants that segregate in a particular way with case/control status.
e.g. Variants in which all the cases are homozygous AA and the controls are AB or BB (for instance)